NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066794_10144503

Scaffold Ga0066794_10144503


Overview

Basic Information
Taxon OID3300005947 Open in IMG/M
Scaffold IDGa0066794_10144503 Open in IMG/M
Source Dataset NamePermafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)715
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location
Location NameAlaska, USA
CoordinatesLat. (o)68.6137Long. (o)-149.3144Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026933Metagenome / Metatranscriptome196Y
F085917Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0066794_101445032F026933GGAGVSNNGNKASTPRTADDTAPILVPDGAGIWTFGDHLRHLAGHAGTIPLVLDEFGRCVICVRRGFFTPNA*
Ga0066794_101445033F085917N/AMIENIRNHPYTCAVCLETARLFEHRAAKHLVEAQDWADQGVANSALEFQTRARLAQQRANAWHLRAKNASD*

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