NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0081539_10000069

Scaffold Ga0081539_10000069


Overview

Basic Information
Taxon OID3300005985 Open in IMG/M
Scaffold IDGa0081539_10000069 Open in IMG/M
Source Dataset NameTabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)236854
Total Scaffold Genes246 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)160 (65.04%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere → Tabebuia Heterophylla Rhizosphere Microbial Communities From The University Of Puerto Rico

Source Dataset Sampling Location
Location NameUniversity of Puerto Rico, San Juan, Puerto Rico
CoordinatesLat. (o)18.402889Long. (o)-66.050054Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012276Metagenome / Metatranscriptome282Y
F029709Metagenome187Y
F053211Metagenome / Metatranscriptome141Y
F057278Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0081539_10000069101F057278N/AMTEPATPDETPQAQPQAQDVHTFTVLRGMVVAIVIETRDWYSGLLQAALARVRIEGLN*
Ga0081539_10000069102F012276GGAGGMTFGKCAWDGCTRHAEKESTGACRTHHVQLRDARCVTCQGQLRNRVELDRKRCTRCAAVRAA*
Ga0081539_10000069124F053211AGGAGMRRQIAAVAVIVTLVPASVLAQAASPDTETQLQQEMRHRRVIVRPLTPPAEVQRDAERAAAELEQQERGQVIARDLNRPAQRPPQVDQDLKGGIQTRSLNNLLHR*
Ga0081539_1000006923F029709N/AMGDFTSSGFTPEQEQFVTEVVSHLCRRYADVIEKLATEIHALTMVLVEKRLITLERLEGARRQLDLAYDLNQALAIRSLIKEIDDLDAS*
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