Scaffold Ga0081460_1114383

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0081460_1114383

Scaffold Ga0081460_1114383

Overview

Basic Information
Taxon OID	3300006213 Open in IMG/M
Scaffold ID	Ga0081460_1114383 Open in IMG/M
Source Dataset Name	Combined Assembly of all intestinal microbial_metagenomes from Inflammed Rag1 mice from UTSWMC, Dallas, Texas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Texas Southwestern Medical Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1681
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Unclassified → Unclassified → Mouse Feces → Intestinal Microbial Communities From Inflammed Rag1 Mice From Utswmc, Dallas, Texas, Usa

Source Dataset Sampling Location
Location Name	UT Southwestern Medical Center, Dallas, Texas, USA
Coordinates	Lat. (^o)	32.815891	Long. (^o)	-96.846336	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F047755	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0081460_11143833	F047755	AGGAG	MGENKVENVINIIKDMNIKDKLRLAICMNDSQWLTLNYDRKEMYNKFDIHLRKLDEEYRTTLINFGQSKYFIINFTMAKLMEMEQTDRNKIALYLFNSIEE*

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