NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068502_1355387

Scaffold Ga0068502_1355387


Overview

Basic Information
Taxon OID3300006336 Open in IMG/M
Scaffold IDGa0068502_1355387 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2160
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000226Metagenome1525Y
F017717Metagenome239Y
F092222Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0068502_13553872F092222N/ALTSIVNRIINDGMNNKEITYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCQDDD*
Ga0068502_13553875F017717GGAGMFNLNKVKAFESNSTTALIAKVVKELGHMFDVLSVKILENRKRIMALETRIKEIEDTFIIKEDK*
Ga0068502_13553876F000226AGGAMKDRTIKALPEYLQPKILSAVAYVNECAPNLNKAVERINTIREHLTDKEVMWVMSLLTFEKLLDMVNNSDEFRNHMQAMKARTIQ*
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