NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099958_1037763

Scaffold Ga0099958_1037763


Overview

Basic Information
Taxon OID3300006567 Open in IMG/M
Scaffold IDGa0099958_1037763 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0770m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1993
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)770
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065862Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0099958_10377633F065862N/AESVKLTDSDRFADPPVDVESVKQTDSVRFTPAAFAIESVKLTDSERFTPAVFEIESVNDIDSDRFTPATFDIESVNDTDSDRFTPAEFAIESVKLTESDRFTPAVFDIESVNDTDSVRFTPADFAIESVKLTVSDRFTPADFDVSSVNDTDSDRFTPAVFEIESVNNTVSDRFTPADFDISSVKLTDSDRFTPADFAIESVNDTDSDRFTPADFAIKSVKLTDSDRFSRAVFVNESVKLTDSDRFRLAVFVNESVKLTDSDRFRLAVFDIESVKLTDSDRFTGAVFEIDSVNDTDSVRFCGAVFDIESVKLTDSDRVDIDQLGLRDRVCHANRF*
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