NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0101569_10110114

Scaffold Ga0101569_10110114


Overview

Basic Information
Taxon OID3300006625 Open in IMG/M
Scaffold IDGa0101569_10110114 Open in IMG/M
Source Dataset NameSoil microbial communities from the Leymus chinensis steppe, China - after adding 10.5 g N m- 2, yr-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChengdu Institute of Biology, Chinese Academy of Sciences
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)856
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium 13_2_20CM_2_54_15_9cls(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The Leymus Chinensis Steppe, China - Nitrogen Deposition

Source Dataset Sampling Location
Location Namethe Inner Mongolia Grassland Ecosystem Research Station
CoordinatesLat. (o)43.63Long. (o)116.7Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010137Metagenome / Metatranscriptome308Y

Sequences

Protein IDFamilyRBSSequence
Ga0101569_101101142F010137GAGMPRGGNKRHHFALNRILIGGLIVYVCAFAILLRNKSFDATDAVVVLIVFGIVFPLIAWIATRRAIPLSISITPSKSQLIVLFGYIIVLSVYLVGGPQWIDQHLPSSWIDSAQTRFFITLAKKLIVFVVIPLAIFRSGFGYRLRDFGIQSEGLRALRGTHLSVVVV

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