Basic Information | |
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Taxon OID | 3300006642 Open in IMG/M |
Scaffold ID | Ga0075521_10011073 Open in IMG/M |
Source Dataset Name | Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3484 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Barrow Environmental Observatory site, Alaska | |||||||
Coordinates | Lat. (o) | 71.299 | Long. (o) | -156.61 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001643 | Metagenome / Metatranscriptome | 659 | Y |
F052106 | Metagenome | 143 | Y |
F061167 | Metagenome / Metatranscriptome | 132 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0075521_100110731 | F061167 | N/A | LYFNPESVHGKYVDIIRQRGHDVTTASSGPDTFAMMRRQIFDVLVMDCAQDTLDILNFTAKAQGLQPSLAVFLADEWGDELVTGVEEFGHVLTMLEDDECAMLAVESQMA* |
Ga0075521_100110735 | F052106 | GGA | VSEVRQATTRQEGTSRTTEERVSRIDSEGKLDEVSRVVSKESESTSGEKLSVVETYSIDVPGTARDSSLHLVERKTSTESLSSTGELATDQRVEQTNPGDPVSCLRVSVLVDGRMVPSSSGFQATRTVRLRDLNGNFGVVEVDTTKSDKVLTIQVQQTHAEKP* |
Ga0075521_100110736 | F001643 | GGAG | MLGTLMNIPTDTLIDMLYVILVGDFAITATDAGEIEQIQRELQRRDEEQSWSFQAVN* |
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