NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0031697_1109637

Scaffold Ga0031697_1109637


Overview

Basic Information
Taxon OID3300006687 Open in IMG/M
Scaffold IDGa0031697_1109637 Open in IMG/M
Source Dataset NameMetatranscriptome of deep ocean microbial communities from Pacific Ocean - MP2254 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1026
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameWest of El Salvador, Pacific Ocean
CoordinatesLat. (o)10.09Long. (o)-99.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F090434Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0031697_11096371F090434N/ARGDNAKGGRDIHILTKKAGKQMMKVDISTEKQINDDQILIKLHDSVEIDNDSALYRRLVGNYRFLTPFNKRTGEYELFVNKKEKNVLLNKFYVKGQVMKDGQKVMNMLVTTNEKPYRVELFLPALLNKIYSDMDEYKMTVEHNPGQLLNVVTNGKKFKGFKISRTGNGNEREIEINGKKLGSGDYTLTDNSFSTKITNAAGDWLEPKITWEGALPKNKDEAANFFAQNNVKVHATGSKRNFDIDLSWKATKPDWDWSTPESMKMNLNIKGKGPRWGDYRLSRDVAIKVENKIIEWDLSGESHFGKGLMATATPIMTEIHLKYLIPQGDLQGKLSKVINGKEY
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