NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066653_10140454

Scaffold Ga0066653_10140454


Overview

Basic Information
Taxon OID3300006791 Open in IMG/M
Scaffold IDGa0066653_10140454 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1161
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002111Metagenome / Metatranscriptome592Y
F008327Metagenome / Metatranscriptome335Y
F077140Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0066653_101404541F002111AGAAGMVVAAPPYVSYSSMTEARIPASLWATTYSSLQALKGHVQEYPGCQSFDVFVRAEGDGDVLVHCCTTWDTAGQLEVFLERGYTFERLLADIGSGLGAAKSLVMEKVF*
Ga0066653_101404542F008327AGGAGGMFPKGDTPEKAREFYLYLQGHHETEGRVATWHVDWLSLAWLWGFLIVLVLALLLWVKQYRTTRQRTGIYPIDSFGGWTTEGAGPATIFFTLFTAFIVAFAVAIIVGHIVYGQKF*
Ga0066653_101404544F077140N/ALSLADAAAGIKAIYQDLLGRAWTEARARGDKLPPEAQKAIPPTVPGQQ*
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