NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066665_10093314

Scaffold Ga0066665_10093314


Overview

Basic Information
Taxon OID3300006796 Open in IMG/M
Scaffold IDGa0066665_10093314 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2191
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042493Metagenome158Y
F042503Metagenome / Metatranscriptome158Y
F064170Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0066665_100933142F064170GGAGMSDMTAVLVAVMAFAVAAAARLSDGTETDSPESEPRRSMSLSDRDSRYGSVAKRGDHP*
Ga0066665_100933143F042493AGGCGGMTTIDDRHRENSQQNDGDPMTTFTAGDMSRQRNAEPTALHNVADTQRLRAAAAQALRILERTGLAPTTAALLRAALEPRAGQASQTHRTVGFGRGVPLRGEARCPT*
Ga0066665_100933146F042503GAGGMTQKELLPHALVTAMMLLTLLATVGCMTWHQAVTGAAGDIASTIDPAEQADKCEDFGCEP
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Institute for Fundamental Biomedical Research
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