Scaffold Ga0104854_10220181

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0104854_10220181

Scaffold Ga0104854_10220181

Overview

Basic Information
Taxon OID	3300007643 Open in IMG/M
Scaffold ID	Ga0104854_10220181 Open in IMG/M
Source Dataset Name	Biofilm microbial communities from a marine aquaculture plant in North Sea, Germany
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Max Planck Institute for Evolutionary Biology
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	95276
Total Scaffold Genes	80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (27.50%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Biofilm Marine Aquaculture Plant → Biofilm Microbial Communities From A Marine Aquaculture Plant In North Sea, Germany

Source Dataset Sampling Location
Location Name	Northern Germany
Coordinates	Lat. (^o)	54.13	Long. (^o)	8.8	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028441	Metagenome / Metatranscriptome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104854_1022018122	F028441	N/A	MTIKQLIKIEDKAKEVWVISPGLHYDTEHKDFSELVSVNLGQKTKYRYIVPATPQIEKHIKVYQKLYGASNADIQKNFLFLPKTEFHPFIMECAIYDASSTCIACTAPALEDGNDVIRLGEKTAKAMAKHFKLLWRKYKRTNP*

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