NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104986_1752

Scaffold Ga0104986_1752


Overview

Basic Information
Taxon OID3300007734 Open in IMG/M
Scaffold IDGa0104986_1752 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)28664
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (82.93%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006696Metagenome366Y
F025942Metagenome199N
F052465Metagenome / Metatranscriptome142Y
F055667Metagenome138Y
F071151Metagenome122Y
F078404Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0104986_175213F025942GGAGMNESWLARNIQPVTVVFLLFSYFFFALLSVFEMETRGAYVDLLGQAMIIVITAIFAGKTAERIVDIRTNKGAPDGP*
Ga0104986_175219F071151GAGGMNCCNANGQCEQGKDCPVRKQRIKEINDAYTNGFKDAQIDDPIDDLAHTFKGLITLLTVVLGLWITYLIIWGKP*
Ga0104986_175222F006696GAGGMKFFKFLKDYWRDLTPAEVIAKELAQAHLDRLEAEGAVEYAQAVLDLNLTRIERLNTRLKEYK*
Ga0104986_175223F052465AGGAMLNNERNTLKRVSMLERLHQRYNTLRVARERLELLKEAKLP*
Ga0104986_175233F078404GGAGGMRQHYKPEPVARPWADMLLAVSIGLILAAILLEYL*
Ga0104986_175239F055667GAGGMTKSEKREVAVTLKMQHFGANYVARALSALYRSARSKKSQDEIMAIALAYGVVNNPEFIA
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