Scaffold Ga0105551_124627

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105551_124627

Scaffold Ga0105551_124627

Overview

Basic Information
Taxon OID	3300007741 Open in IMG/M
Scaffold ID	Ga0105551_124627 Open in IMG/M
Source Dataset Name	Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Dobu 'bubble', co12ds 200bp-25jan2016
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of New South Wales
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	540
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Coelcarteria Singaporensis (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location
Location Name	Dobu 'bubble' site, Papua New Guinea
Coordinates	Lat. (^o)	-9.73665	Long. (^o)	150.867667	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F080158	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105551_1246272	F080158	AGGAGG	MATYKSDAGAILQPGNQINGLSSFNHEGVFGWPGIEAFEQIGYVKVTNVAADKASFKSFNITVPSPDRRVSDRVRDDRTSLVVKASTDRPAYVYGASIAIAQDTPSGGL

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