Scaffold Ga0104935_109528

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0104935_109528

Scaffold Ga0104935_109528

Overview

Basic Information
Taxon OID	3300007852 Open in IMG/M
Scaffold ID	Ga0104935_109528 Open in IMG/M
Source Dataset Name	Non-marine hypersaline water microbial communities of A?ana Salar, Pa?s Vasco, Spain - Cell Surgencia A?ana 2014
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Alicante
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1541
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline Water → Non-Marine Hypersaline Water Microbial Communities Of A??Ana Salar, Pa??S Vasco, Spain

Source Dataset Sampling Location
Location Name	A?ana Salar (Pa?s Vasco, Spain)
Coordinates	Lat. (^o)	42.80111387	Long. (^o)	-2.985507	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003128	Metagenome	506	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104935_1095282	F003128	GGAGG	MQVEIEVDPEDIVKKKADDRGRVTLGAEYAGKKVRVAVLEVVEE*

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