Scaffold Ga0111031_1026242

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0111031_1026242

Scaffold Ga0111031_1026242

Overview

Basic Information
Taxon OID	3300007900 Open in IMG/M
Scaffold ID	Ga0111031_1026242 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 25 cmbsf. Combined Assembly of MM1PM1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Aarhus University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8799
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From Aarhus Bay Station M5, Denmark

Source Dataset Sampling Location
Location Name	Aarhus Bay station M5
Coordinates	Lat. (^o)	56.10555	Long. (^o)	10.463333	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F081925	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0111031_10262422	F081925	AGG	VGLVFLFVGAMDVRGGFGVWAASSIMLGLFLIVFGTSFFVSDERQKVRRRVSFGFLAAALVFLGIALALFRS*

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