NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114340_1002676

Scaffold Ga0114340_1002676


Overview

Basic Information
Taxon OID3300008107 Open in IMG/M
Scaffold IDGa0114340_1002676 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10296
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (56.52%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039139Metagenome164N
F053301Metagenome / Metatranscriptome141N
F054860Metagenome139N
F060908Metagenome / Metatranscriptome132Y
F093847Metagenome106N
F100477Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0114340_100267615F054860AGAAGLNITIKNARINYHNSEETVAFNALLCNDKIPFAEVSNDGRGGENRYRPLGDSMDWIFNHALVTAFREWCSNQPPVYDKESGNTYNFSADIFVNDCLTQHIGNQCELAVSL*
Ga0114340_100267617F053301GGAGGMTVKEVIDLLDTIAQKEGYNTECIVEIEEQNYNTEAKVHTVCTNGYEDGSKKIALVGTKDDETYEE*
Ga0114340_100267618F100477GAGMKSIQLSTIKKKIGAERFTIIRDVIFKSSIDRPSRGMTLQRDRIVNAIKDPETKKNLENLTAKVDWFVVDVV*
Ga0114340_10026765F093847GAGLTINLRKTFARVVYFIEQSSKGKSRETILKELDLTEDEFQFLLNKMLEISELKDKDAVISSITILDNVFIGGVYVTSNNKTLLSL*
Ga0114340_10026766F039139GGTGGMFLNAFEFTSEDIVTILRAHETYITIEQLAELTDVLDYDSIVRAALVYNDPDIQLKSALSQAEDLMIMDGLYITEPKRFHVDN*
Ga0114340_10026767F060908N/AMTRKLDYTISETVTARSKNRILVPKKYIKYIGMNPGFVAHVTNLNGAFIVSACPTPESKKFMVDKDGAVRFYGNNSAYKIMIADNVVVLNEYVP*
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