NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114341_10031186

Scaffold Ga0114341_10031186


Overview

Basic Information
Taxon OID3300008108 Open in IMG/M
Scaffold IDGa0114341_10031186 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5002
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005630Metagenome / Metatranscriptome394N
F005879Metagenome / Metatranscriptome387Y
F028510Metagenome191Y
F036701Metagenome / Metatranscriptome169Y
F088906Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0114341_1003118610F036701N/AMSMDGLTILAIWILLSFPIVRHVNTKMEEANDNQRFKLAFQFALFIRAQFEVPKWYLIQLTKFLSK*
Ga0114341_1003118612F088906N/AMEKQSSRIVNKGLAGEPQHLVIQVTDTLKIFEFSQIKHVNESDVIRDVILVDDELNQPEILHILNNMGQTVDITFDENENVTIYF*
Ga0114341_100311865F005630N/AMANLYEVDGFYGTRNRGTIFVYETYSGKRWYCVEGSCNINCTYDEINEGCNVERLSDIDTMSSRDGIYSARELYDFVIN*
Ga0114341_100311866F005879N/AMFNEQIFWKDGFEGECKGGIFTRAVDLKKFLELVEANENGNGGEVVGLRFSDNNLEVIVNPKNK*
Ga0114341_100311868F028510N/AMGDVLKQRTYICECGATTKEIVWESQLSKTKFKCGECSKTLTNKNLMVANKTEAVSIRTPTKNR*
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