NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103768_1007996

Scaffold Ga0103768_1007996


Overview

Basic Information
Taxon OID3300008801 Open in IMG/M
Scaffold IDGa0103768_1007996 Open in IMG/M
Source Dataset NamePlanktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample NO3-3
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Duisburg-Essen
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)727
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Eutrophic Pond → Planktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany

Source Dataset Sampling Location
Location NameUniversity Duisburg-Essen, Germany
CoordinatesLat. (o)51.46Long. (o)7.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080070Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0103768_10079961F080070N/AMKSLLIVLAVCIASTLGAHLNAREVAQKDLISTIVTSLGLDSVWSTITALGSSVYLQFINIGTQLLFAGQQVWAQVKPVLAQLVSDLTNHAGDAVTIVAQTIASLNQIIGGSGKRDLVSSIVSSLGLDQVWSTITSLGSAVYLQFIQIGTQLLFAGQQIWAQVTPVLSQLKDDLINHTGDAVTIVAQSIASLNQILG*
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