NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115026_11022871

Scaffold Ga0115026_11022871


Overview

Basic Information
Taxon OID3300009111 Open in IMG/M
Scaffold IDGa0115026_11022871 Open in IMG/M
Source Dataset NameWetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)662
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland → Wetland Microbial Communities From Old Woman Creek Reserve In Ohio, Usa

Source Dataset Sampling Location
Location NameOld Woman Creek National Estuarine Research Reserve, Ohio, USA
CoordinatesLat. (o)41.2239Long. (o)-82.3039Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050409Metagenome / Metatranscriptome145Y
F074732Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0115026_110228711F074732N/AISQEREQVKKMVRAQLDTLRWIKTQRAEVVPFLQKFYGLDEGMALESHTIYAKLIIDDARPLAEAVKTVLDQQGKPDLPLDRVVDASVVEEVLRERK*
Ga0115026_110228712F050409AGGAMADNGIRIIDIDGHVREADDLFEKYLEAPFRARAPRIEKVANGQLLFRLEGDRHHRRPDESPFRIKT

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