NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114963_10266263

Scaffold Ga0114963_10266263


Overview

Basic Information
Taxon OID3300009154 Open in IMG/M
Scaffold IDGa0114963_10266263 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)966
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019099Metagenome231Y
F023293Metagenome210Y
F052465Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0114963_102662633F023293GAGMKYGILDDEGNVVRWVWHLPPYPHIVQKIKRQRKPKLDLSNVPEALF*
Ga0114963_102662634F019099GGAGGLIINGKIVKDWDKRQISTGYQRPNQFRVITWDMGRVQSWLLGKQPLARTLLEKVIR*
Ga0114963_102662635F052465N/ALDEQMVLEMLNHELATEGRASILRRIHQRYNVLRVSRERIELLQQAKQP*

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