NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075423_10706868

Scaffold Ga0075423_10706868


Overview

Basic Information
Taxon OID3300009162 Open in IMG/M
Scaffold IDGa0075423_10706868 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1064
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8444Long. (o)-83.9599Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039251Metagenome / Metatranscriptome164Y
F044076Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0075423_107068682F039251GGAGMADARQLRLDSERAFRLARAGCRKFFDDLNDLGWDLQLQAQKVERDAQKPEYLNKQRGSL
Ga0075423_107068683F044076AGGAMCISLKDSCAKGFNKWANTYQPEIKHDLRTNNGSVAASPDQDNLLMTSLERPHRPWLVPGAETL*

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