NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103833_1004718

Scaffold Ga0103833_1004718


Overview

Basic Information
Taxon OID3300009333 Open in IMG/M
Scaffold IDGa0103833_1004718 Open in IMG/M
Source Dataset NameMicrobial communities of water from the North Atlantic ocean - ACM52
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Georgia
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)521
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Source Dataset Sampling Location
Location NameNorth Pacific Ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000981Metatranscriptome814Y

Sequences

Protein IDFamilyRBSSequence
Ga0103833_10047181F000981N/AKTGRGALTLDQFVEWANAHVVSAIPKIPTGDVGLYHVEDYSEEQYIGFVEKAVNNPGSYEHASFYNFILNCFVEADEQCQGRITYDQFDKLLTRAATVPRHFGLAPPESSTEARKKMFDELELKRGGKGTGYVTARTFWEWTVVHVSAMIDLQKAGKGWRENH*

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