NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300009333

3300009333: Microbial communities of water from the North Atlantic ocean - ACM52



Overview

Basic Information
IMG/M Taxon OID3300009333 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117984 | Gp0126422 | Ga0103833
Sample NameMicrobial communities of water from the North Atlantic ocean - ACM52
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Georgia
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size32113248
Sequencing Scaffolds20
Novel Protein Genes26
Associated Families24

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Lingulodiniaceae → Lingulodinium → Lingulodinium polyedra1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP11021
Not Available5
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae1
All Organisms → cellular organisms → Eukaryota4
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → surface water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationNorth Pacific Ocean
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000073Metagenome / Metatranscriptome2639Y
F000075Metagenome / Metatranscriptome2622Y
F000237Metagenome / Metatranscriptome1498Y
F000981Metatranscriptome814Y
F001028Metagenome / Metatranscriptome801Y
F001439Metagenome / Metatranscriptome694Y
F005505Metagenome / Metatranscriptome398Y
F006501Metagenome / Metatranscriptome371N
F009464Metatranscriptome317Y
F011139Metagenome / Metatranscriptome294Y
F013645Metagenome / Metatranscriptome269Y
F017830Metagenome / Metatranscriptome238Y
F023858Metatranscriptome208Y
F025911Metagenome / Metatranscriptome199Y
F038531Metatranscriptome165N
F039152Metatranscriptome164N
F041786Metagenome / Metatranscriptome159Y
F043763Metatranscriptome155N
F046166Metatranscriptome151Y
F061512Metatranscriptome131N
F071939Metatranscriptome121N
F078190Metatranscriptome116N
F079563Metatranscriptome115N
F100323Metatranscriptome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0103833_1001971All Organisms → cellular organisms → Eukaryota → Sar715Open in IMG/M
Ga0103833_1002194All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Lingulodiniaceae → Lingulodinium → Lingulodinium polyedra688Open in IMG/M
Ga0103833_1002356All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Fragilariopsis → Fragilariopsis cylindrus → Fragilariopsis cylindrus CCMP1102668Open in IMG/M
Ga0103833_1002444Not Available659Open in IMG/M
Ga0103833_1002642All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus640Open in IMG/M
Ga0103833_1003114Not Available603Open in IMG/M
Ga0103833_1003117All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae603Open in IMG/M
Ga0103833_1003194Not Available597Open in IMG/M
Ga0103833_1003529Not Available577Open in IMG/M
Ga0103833_1003619All Organisms → cellular organisms → Eukaryota572Open in IMG/M
Ga0103833_1003665All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata570Open in IMG/M
Ga0103833_1003727All Organisms → cellular organisms → Eukaryota567Open in IMG/M
Ga0103833_1003752All Organisms → cellular organisms → Eukaryota566Open in IMG/M
Ga0103833_1003791All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata564Open in IMG/M
Ga0103833_1004051All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium550Open in IMG/M
Ga0103833_1004071All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata549Open in IMG/M
Ga0103833_1004320All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Siphonostomatoida → Caligidae → Lepeophtheirus → Lepeophtheirus salmonis537Open in IMG/M
Ga0103833_1004718All Organisms → cellular organisms → Eukaryota521Open in IMG/M
Ga0103833_1005040Not Available508Open in IMG/M
Ga0103833_1005146All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda504Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0103833_1001623Ga0103833_10016231F000237MVLHYFVP*YYLYLIQMHVAFCHES*DSDSGEATYEDKTGTYVSWFYDAMLKEFQDG*Y*VMYIFTYFSLHHFNGGTVNYFFFERWNISEVDEIRFYGVAPH*YFRPFMGLLVVTPTHYEGLM*MGL*LGLLAFLPIMYT*YNTYNNYLPIIPMQFSLLQTGAFILFMLSMYTMNSMLPCGRYYYDPEGGYVGNP*VKFSYQYAYVYMF*FIHHLDVIEYYSVNFSRAFIQRSFTLSQQGYRRDKTNLQH*N*
Ga0103833_1001700Ga0103833_10017001F000073LTGGKVSTPTESLKLKDTFVNWMESKKELRNICDEGKGKLQWEREIPQEALDNLQNLANSDFKKNLGKIIHDIYLTGHNLFKDMPQGDHKKRAKYRFASKTLMRILPNELKAEVEGLIAGKTMTLDLYEILGQCTWGQGKSL*
Ga0103833_1001971Ga0103833_10019711F046166EHTCPSGHVLQRHKAPNSDYSCDVCGKGVAEGETLWGCRLCDYDRCQQCANKGTVEFTDVDGDEVVLKDDNAFGIECYINGVLVNGEPMMKLRVSDRTIALEGDSADKWAAATVPIGQEYILKQALNLFAEVQSRKGV*
Ga0103833_1002194Ga0103833_10021941F100323MSPAVEEPGLSLFCFAVYTKNTGSPKTSQELELFRMQRENSWSLFSCAEWAVYSDVVEDLGGGVKTIEVRDVKGDFNILKRKETGCWVNTGMFVQVWSAIRDAGHATNHNWVIKVDADAVFFPSKLVRALSDYTVPQEGVYMENCKYVDWGYFGNLEVFSKQAFITLVDNLETCYTSIPWKDGVLGGKYGPMGEDLFAQKCMDMLGVGRQENWMLT
Ga0103833_1002356Ga0103833_10023561F025911NVVFGAAGHNGRMIVGGDLTVDGEVTELHNYEYDPASHPLPLGDDLSKICEMQPPPPCNETAFKIMTSEEVCPSKPEGVVKLVKSTADLPEDEPMIYNIIMEPPKDGAHTVKFQVDNPFTNYTDIYVKHSKKAGKYGMDPVCESMPFTAGCELEAPLIEVSCHEYDGVDPFALVSIYFASNEDAYVTDHAVLGTEIDKCCHPPSEYLEDGYGIIKYTFEIQC
Ga0103833_1002444Ga0103833_10024441F078190AAKRKAGRKAMFDAIDGADGFKPRGKIAMGQFLGWSTTHIFSKVASIKGETGRVAFRHVEDFTKEEYVAYVEEAVNKPDSIASTTLYNYLLTLFVEADVDCKGKISYEQFDGLVEIAAASPRHFGLAPAGRDAAARRMMFDAMDYNKSGYVTFRKFLRFVREHAREKVADYKASN*
Ga0103833_1002642Ga0103833_10026422F041786SLMTFGDKFSASEVDNAFGEFLIEDGMIDAVHLKGLMVSKKEEEAE*
Ga0103833_1002714Ga0103833_10027141F000075SSAIAAANRYDSMNEDDLLVNLESTLSSALSSEARGDSDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0103833_1003114Ga0103833_10031141F006501GLTKDANEKCQFLDFLTEPAALPKESADKKTKLAYGETMMGYWCNKDEQFKACSAATDALAPVVKECNKKQTQFESDFCAMAIVYHAQCQDLNDVCYTETRAAYDSSVASTSKLLGKWKIEYQALKKINCFLDVWMENGDANTVSSEKLAACKATEADASIMNIDFGTPVKEFVCADAGFGTLPDYPGTPEFVTKEYGAWP
Ga0103833_1003117Ga0103833_10031172F013645MNPAFLLGTAFNIAYWHRKYHSGTICKGVSNPQTSNALSGCEKEAYEKNLKEKEVKNRKD
Ga0103833_1003194Ga0103833_10031941F043763DFTDEAPEELIVSGREGYNETMNGRYQRGDRLHEGRVFYSHTERKFVIRWCPAKRSWFFDWRGLNTDTTASAALAQDIEHPHLATQAWRVFDGKKWISDAKLALCATIEKKQSEGEHVDFSEMNGYEEGTSALTGGVSV*
Ga0103833_1003529Ga0103833_10035291F001439EAGAQTADGAQQGKDMVCVCKRIKKPANVKCNRTVEIEEPPQDPKTLKELVQCTPGGYNLTQAKRLLLRKEAKQRQEMELAQEKFEVDQVKLMTTCLSGHCNPASDLNSPTFFTPPKPVEPMECYDRCHDNQCKPIWKNPAQGWEDWYACVQQCVSGCYIIQ*
Ga0103833_1003619Ga0103833_10036191F061512IGSMIGNLTCVMTKLDMLDSALQVNLKLWTTDVWQQLYLKKTLAGEDPEWRQKMIGGYTDCYQVASNWPQQSLDRNPITKVFGRHMIFFKCAKKNEMTNCALGQMKRWVEQWYGASENNTAYGLPEDEYEAAGLGLMVLDNAASEEEKFVSDFFWGVADM*
Ga0103833_1003665Ga0103833_10036651F011139MGLFLGLLAFLPVVYNLYNTFSKYVATIAMQNSVLQTTAFIIFMLSLYCANSMLPCGRYYYEPEGGYVGNP*
Ga0103833_1003727Ga0103833_10037271F038531QKIMKIASVFVCITIALVNGKPQGPFLGLGPGPFHGPGPLPYALGPAVCPEEVCTACEEEGATDLKPILEINCQEGLEDCHASAKDCSANAVDCNEPLKDCTCHIDPQDEGCTKECLIGPGPCLRENAITVGKCVAEHREEIAKCVLEQENTVGKCLNEKRISLAKAEECLACAPGCKKEEK*
Ga0103833_1003752Ga0103833_10037521F023858KLWTCPNGRNSCVEYYLKLNGPNCCKCDQPSLQPPKMWDIPKSNFFTKVGFVGYEDTTELDDAPIKGAEHWATSSVLPKVLTVTYDYFLHREADDVITHRIDFNTSTGSEGSILYGGFAVAHDIDAHRAKFAQPEVCKGNIVPCCDTDEVMSKWCKHDYAVQQAEKSAVTV*
Ga0103833_1003791Ga0103833_10037911F009464GYFGNLEVFSKQAFATLVNNLDTCYSSLPWKVGVHGGKYGPMGEDLFAQKCMDLMGVAKQENFGLTTDGACEADRPEGQKKNKKFVPTCAGVSTPSIHPFKKPEAYRECWAQAASVQP*
Ga0103833_1004051Ga0103833_10040511F001028DGEGKMEISDAAKSGDGTLQNVGIKVGGKFKSPVNNQCFDTQAALDLHLKYLHDPKKQGSNLEE*
Ga0103833_1004071Ga0103833_10040711F005505*Y*VMYIFIYFALHHFNGATVNYFFFER*NIAEMDEIRYYGVAPH*YFRPYMGILVISPTHYEGLM*MGLFLGSLACLPLIYNVYNTFNKYVSTIPMQNSILQTTTFTLFMMSLYCANSMLPCGRYYYEPEGGYVGNP*VKFSYQYMYLYLC*LLHHLDLIDHYIFQFSQTFLRKINPNLLK
Ga0103833_1004257Ga0103833_10042572F071939TSNWEPHLIHYEPKKVLIKEWVTSDSFADDISSVFYEVDRDGNHMLEWNNGEIRNFINKVYQMKGLATPCESTMYDMYRIFDEDNNGGLDAVEAQHLAQAHVMSLVTALHL*
Ga0103833_1004320Ga0103833_10043201F079563MKIYSNLRQMGGEELGHSEGTDFVIAEDLGHLLVGDEELLVFGILEVVLFQVSPKLFDAFSTASLFFANNVGEVSAKLHGFGESGSFGHFWMFFGG
Ga0103833_1004689Ga0103833_10046891F000073KEYMDENSWMREHIETGKGNLQWERDIPPAALSNLENLAAKDFKGNLGQIIHDIYQTAHQMFSDMPQGDHKKRAKYRFASKTLMRILPDANKKEVEGLIEKGNITLDLYDILGQCTWLQPAA*
Ga0103833_1004690Ga0103833_10046902F000075MEAYEAMNEDQLLVSLQSKLNSALSSESRGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQQVVDAR
Ga0103833_1004718Ga0103833_10047181F000981KTGRGALTLDQFVEWANAHVVSAIPKIPTGDVGLYHVEDYSEEQYIGFVEKAVNNPGSYEHASFYNFILNCFVEADEQCQGRITYDQFDKLLTRAATVPRHFGLAPPESSTEARKKMFDELELKRGGKGTGYVTARTFWEWTVVHVSAMIDLQKAGKGWRENH*
Ga0103833_1005040Ga0103833_10050401F039152GPRRSNWKLYVVAITCVCFLAGMLVNTVPESAPADNQLDSVVTQALKMFHGSKANMPNDDDYLAGEKDFQKRFKTLKGKADLYLQNETLTAWKTMNKKNVVVAGAIEKAFPQKDLKAAIANAMKGSGSGSGSR*
Ga0103833_1005146Ga0103833_10051461F017830LWFNHKNSMAGTTILLQLKKGDEVCVYAYTGTWLADFPMNHYTHWVGLLLKPSQEEAEQLKKEAYESC*
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