NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116590_1001026

Scaffold Ga0116590_1001026


Overview

Basic Information
Taxon OID3300009361 Open in IMG/M
Scaffold IDGa0116590_1001026 Open in IMG/M
Source Dataset NameMicrobial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_176d_3 SPAdes
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Liverpool
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2961
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment

Source Dataset Sampling Location
Location NameUnited Kingdom
CoordinatesLat. (o)54.9632021Long. (o)-1.6348029Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013592Metagenome270Y
F043408Metagenome156N

Sequences

Protein IDFamilyRBSSequence
Ga0116590_10010261F043408N/ALGETMKVRKEVSLTVETAQIANKMNNFSQWVRIGLRQYQHGEDVASETMRRMRWAKAAHMLASTLLEHALEIDPDYKGDVQTIIAKAMNQTTLEEFE*
Ga0116590_10010264F013592N/AMRIDMSLAPELVWLEEVLFEDSVIPLSTLAKFHPLVRIPVIGFQAADIVGTELAIRTIEAGGVGALELFTPEIRRYEQTALVGMGGMRI*

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