NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0116102_1003278

Scaffold Ga0116102_1003278


Overview

Basic Information
Taxon OID3300009632 Open in IMG/M
Scaffold IDGa0116102_1003278 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6274
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).4 to .5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015924Metagenome251Y
F061167Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0116102_10032781F015924N/AEFDTREVAQKVCPFAPAAATVATARPMSMAYYLQACGRADLQIVPLYDTHYAPRDGDLIVLEPSRRFFETQRFFDALGNSKMPHSEIRVGPVLASTIYLFDPSVPGPKSGKEELTLTQLRGAPPRFDNDDQEPASTNTSRFGLSDLTRRLIQ*
Ga0116102_10032787F061167N/AMRERGHNVVTTTKGTDALALMRRQSFDALVMDFTQETVDIINFTTKACGLQPSLAVFLADEWGDELATGLEELSHVLTMLEDDELARLKVESRTA*
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