Scaffold Ga0123340_1013613

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0123340_1013613

Scaffold Ga0123340_1013613

Overview

Basic Information
Taxon OID	3300009763 Open in IMG/M
Scaffold ID	Ga0123340_1013613 Open in IMG/M
Source Dataset Name	Root nodule microbial communities of legume samples collected from Mexico - Siratro Mexico nodule mix
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7221
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Nodule → Unclassified → Unclassified → Root Nodule → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location Name	Mexico: Nepantla
Coordinates	Lat. (^o)	19.09098	Long. (^o)	-98.87936	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F027116	Metagenome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0123340_10136135	F027116	N/A	MVVNCDQNNYQIRFWLLNNYKIKAIIKFSDQLSQDNWYLTLATKVLATYIIRF*

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