NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0123340_1049547

Scaffold Ga0123340_1049547


Overview

Basic Information
Taxon OID3300009763 Open in IMG/M
Scaffold IDGa0123340_1049547 Open in IMG/M
Source Dataset NameRoot nodule microbial communities of legume samples collected from Mexico - Siratro Mexico nodule mix
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1575
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Nodule → Unclassified → Unclassified → Root Nodule → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameMexico: Nepantla
CoordinatesLat. (o)19.09098Long. (o)-98.87936Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072021Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0123340_10495471F072021N/AMSKQMMYEQGYCNTSTSIQRNTKETSKGIEGLVLMIKSAKNSLSQMIAPAAVQENRS*

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