Scaffold Ga0133747_10027

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0133747_10027

Scaffold Ga0133747_10027

Overview

Basic Information
Taxon OID	3300009962 Open in IMG/M
Scaffold ID	Ga0133747_10027 Open in IMG/M
Source Dataset Name	Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 17
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Autonomous University of Barcelona
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	17318
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (78.26%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Saliva → Human Oral Cavity → Human Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain

Source Dataset Sampling Location
Location Name	Alicante,Spain
Coordinates	Lat. (^o)	38.3852246	Long. (^o)	-0.5132249	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F105377	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0133747_100272	F105377	AGG	VRIPVRDFDNLPLLTPEEAFERAWEVGGPARPVFDRGYRVRGLNDWKAIETLLRQGDVEDVAIASFGLKNFEEIFDAFAMLHERGWHLWQTSANVYVGGEPRTVQAIRAHYRGD*

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