Scaffold Ga0133747

Basic Information
Taxon OID	3300009962 Open in IMG/M
Scaffold ID	Ga0133747_10059 Open in IMG/M
Source Dataset Name	Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 17
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Autonomous University of Barcelona
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009962 Open in IMG/M

Scaffold ID

Ga0133747_10059 Open in IMG/M

Source Dataset Name

Human saliva viral communities from oral cavities of healthy adults from Alicante,Spain - individual 17

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Autonomous University of Barcelona

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8937
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (92.31%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8937

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (92.31%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Saliva → Human Oral Cavity → Human Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Oral Cavity → Saliva → Human Oral Cavity → Human Saliva Viral Communities From Oral Cavities Of Healthy Adults From Alicante,Spain

Source Dataset Sampling Location
Location Name	Alicante,Spain
Coordinates	Lat. (^o)	38.3852246	Long. (^o)	-0.5132249	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Alicante,Spain

Coordinates

Lat. (^o)

38.3852246

Long. (^o)

-0.5132249

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F071329	Metagenome	122	N
F074985	Metagenome	119	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0133747_1005910	F074985	AGGAGG	VELTDGGWYKTPRIIKGKDFLAHIHDTYASGNSMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINTFPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMTQINFNRDQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID*
Ga0133747_100592	F018385	GGA	MMAENRWDPYKELSIEKDRDPVLDDPIIYGVNVPHFTVTVYSPEGRVSKYWNARILQDQVGNCRIACPRDGKILCFNWFKWTSYMFTHDGMNELVFMPDSRRRVVSQLSFDHVPMKEVN*
Ga0133747_100593	F071329	AGGA	MLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVEKQFDETVAAVKEASTHIEIED*
Ga0133747_100595	F043991	AGGAG	MSKKNSSVIDYFDLNGDMNEEAYEFEDVKLEEYIDKRSNIKPTWVGKYSHQLHFDLADDTEVSFYKGLGIVYADINFPNGIRTILFKCRQKKNLTRFISRVLELAQGDSSNIHPDFRA*
Ga0133747_100598	F027205	AGGA	VASRLIVSADDILKAVKESEEFERKALAEARKRDRAEGKEPREILYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK*
Ga0133747_100599	F036281	AGGAG	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNSEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYEAKQYHVKSFMRVPGSTDLWITAEREHGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0133747_10059

Overview

Ecosystem & Geography

Associated Families

Sequences