NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0133925_101117

Scaffold Ga0133925_101117


Overview

Basic Information
Taxon OID3300010011 Open in IMG/M
Scaffold IDGa0133925_101117 Open in IMG/M
Source Dataset NameBeer lees fermenting microbial communities from anaerobic reactor in biotech lab of the University of Hong Kong, China - sample2_75d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33019
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (81.82%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Reactor → Draft Genomes Reconstructed From Beer Lees Fermenting Consortia

Source Dataset Sampling Location
Location NameHong Kong
CoordinatesLat. (o)22.3964Long. (o)114.1095Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075996Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0133925_1011179F075996AGGAMLNSATGQAVGILLPFWSYIPTDRISPKGLLYPVSQVMKEGRLFRFVMLVGEPEEEVSLAGKDFFWQDTDRMYRPKYCAIDITADFKGRICTFTGLYARHDGLYVNGKRAGSFEDTRDIFVHYGLGEVWNLITGDIRPSCCVYKYGRLFVPETEVCLGLLSEKAQFPKGYDMKDLGRVERLLEDAGVFKIPEEISLAEVEEKLSKFSEIEKILDEFSAQDEETLLR*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.