Scaffold Ga0126321_1039805

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0126321_1039805

Scaffold Ga0126321_1039805

Overview

Basic Information
Taxon OID	3300010145 Open in IMG/M
Scaffold ID	Ga0126321_1039805 Open in IMG/M
Source Dataset Name	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	684
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates

Source Dataset Sampling Location
Location Name	Kohala Peninsula, Hawa'ii
Coordinates	Lat. (^o)	20.147	Long. (^o)	-155.8342	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052443	Metagenome / Metatranscriptome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0126321_10398052	F052443	GGAGG	MFVETYRQENSGSIMAGGDARPIPYPKISQEDWRVWTLFLPVRSANINRISARAIKEESLHFSYGIPYALTEELQKATELFDKVEVWRKRDVSKDPIAVGVLDGERYLIARWGMEKLLPFESIKKAVPLILAWKYATGPAGAMAGLIGMGFLAWGMLF*

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