Scaffold Ga0136269_1004125

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0136269_1004125

Scaffold Ga0136269_1004125

Overview

Basic Information
Taxon OID	3300010228 Open in IMG/M
Scaffold ID	Ga0136269_1004125 Open in IMG/M
Source Dataset Name	Freshwater aquifer microbial community from Bangor, North Wales, UK, enriched with nitrile substrate, replicate 2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Fidelity Systems Inc
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1778
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia → Thermoanaerobaculales → Candidatus Sulfomarinibacteraceae → Candidatus Sulfomarinibacter → unclassified Candidatus Sulfomarinibacter → Candidatus Sulfomarinibacter sp. MAG AM1	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Unclassified → Unclassified → Unclassified → Freshwater → Freshwater Microbial Communities Enriched With Nitrile Substrates

Source Dataset Sampling Location
Location Name	Bangor, North Wales, UK
Coordinates	Lat. (^o)	53.23	Long. (^o)	-4.13	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F064731	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136269_10041251	F064731	AGGAGG	MSSFRRVALFLSILAFVAPFSPAADFEADTNGPWINVDVIDLADYGDATYLDYLGEGYVAMLDALMSEEMILDYGVMMKTTGSTSDGDVVVWWSVKSLADYEKALERMGTLAGELWTEGELAELWPKLEKVRTIKSSNLXXXXLYRAVLWNKVAE*

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