Scaffold Ga0136269_1015157

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0136269_1015157

Scaffold Ga0136269_1015157

Overview

Basic Information
Taxon OID	3300010228 Open in IMG/M
Scaffold ID	Ga0136269_1015157 Open in IMG/M
Source Dataset Name	Freshwater aquifer microbial community from Bangor, North Wales, UK, enriched with nitrile substrate, replicate 2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Fidelity Systems Inc
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	836
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Unclassified → Unclassified → Unclassified → Freshwater → Freshwater Microbial Communities Enriched With Nitrile Substrates

Source Dataset Sampling Location
Location Name	Bangor, North Wales, UK
Coordinates	Lat. (^o)	53.23	Long. (^o)	-4.13	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F036294	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136269_10151572	F036294	N/A	VVVTDRGSADEAVVGVKPIAVEDVVTPLRVKLSESDKDVGAEGRNM*

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