Basic Information | |
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Taxon OID | 3300010234 Open in IMG/M |
Scaffold ID | Ga0136261_1052497 Open in IMG/M |
Source Dataset Name | Freshwater aquifer microbial community from Bangor, North Wales, UK, before enrichment, replicate 2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Fidelity Systems Inc |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 879 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Microbial Communities Enriched With Nitrile Substrates |
Source Dataset Sampling Location | ||||||||
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Location Name | Bangor, North Wales, UK | |||||||
Coordinates | Lat. (o) | 53.23 | Long. (o) | -4.13 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F016971 | Metagenome / Metatranscriptome | 243 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0136261_10524971 | F016971 | GGA | MENAVQQMPIDAKNAVEVVVYVKADLGEDQRNLVISALEKTDGIIGAEFCTLRNHLMLTKYNKDIFSSQDVLKSFDSLKLEAKLIGPI* |
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