Scaffold Ga0134098_1007012

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134098_1007012

Scaffold Ga0134098_1007012

Overview

Basic Information
Taxon OID	3300010265 Open in IMG/M
Scaffold ID	Ga0134098_1007012 Open in IMG/M
Source Dataset Name	Switchgrass degrading microbial communities from high solid loading bioreactors in New Hampshire, USA - 9_31_10_142_A3 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4403
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Switchgrass Degrading → Switchgrass Degrading Microbial Communities From High Solid Loading Bioreactors In New Hampshire, Usa

Source Dataset Sampling Location
Location Name	USA: Dartmouth College, New Hampshire
Coordinates	Lat. (^o)	43.726	Long. (^o)	-72.1429	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020859	Metagenome / Metatranscriptome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134098_10070125	F020859	AGGAGG	MKKIIAKEVHPSNVDFRHYFDDDGLKSVGGENCAVYIIPADRGRYSGFNLEEYEEIEEMADSLIETFEEVSPKNEYYPTYKEAMLSHNIDYTSRRCHLLKEWAEHANPYDTRDIAAFLTITTGEEWNVRAFRGYSQGDYCEVVYCKAHYSEEHITEIGKFWLGCGTEFYIDGCRGYYVPDTIRWQEGETLRKYLADCYGCKPDELEIYLYDGEHIVADYRLMD*

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