NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134126_10393544

Scaffold Ga0134126_10393544


Overview

Basic Information
Taxon OID3300010396 Open in IMG/M
Scaffold IDGa0134126_10393544 Open in IMG/M
Source Dataset NameTerrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1611
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil → Terrestrial Soil Microbial Communities With And Without Nitrogen Fertilizer From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Kellog Biological Station, Michigan
CoordinatesLat. (o)42.3938Long. (o)-85.3708Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007316Metagenome / Metatranscriptome353Y
F099730Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0134126_103935441F007316GAGVFGRPKTLAAAEKLQEQVMAAGFTLTSIEVGCNEFRVVIRGYDTYEIAVALQAEATTKTRFRPTVECYQAPDKNGELEVAMGHEPDLEAAQALVALALSRGFPNAQLESDPCGGYEVMMKGFIDRAQATAFADEAYSVGFNAHVESES*
Ga0134126_103935443F099730N/ALYALTELHDPEAIELFITEEDARRALEDCLRDEPQWRDRLGVTDVERDHEHTSLN*
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