NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134127_10000003

Scaffold Ga0134127_10000003


Overview

Basic Information
Taxon OID3300010399 Open in IMG/M
Scaffold IDGa0134127_10000003 Open in IMG/M
Source Dataset NameTerrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)545033
Total Scaffold Genes473 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)268 (56.66%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil → Terrestrial Soil Microbial Communities With And Without Nitrogen Fertilizer From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Kellog Biological Station, Michigan
CoordinatesLat. (o)42.3938Long. (o)-85.3708Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075007Metagenome119Y
F091815Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0134127_10000003347F075007GGAGGMSWTRTCLVLLVLAMTLTVPSVTHAQRCRGCEPEDTLPHGHIWPALGVHVGTPQKASAALGVVIGEVWQKEGHEHSRNLALFAEPGISAGRASLAYLDHGYGSFGSGFGVAATVLRTWKDPWTVKPNVTYVGGDVILWPILFTGPRIGVFRSVSGLETSRKWFVSLDIGIGL*
Ga0134127_10000003349F091815N/AVRLDRKLLLIAPTIVLACVTAGIIYAAVQLHVLSSVGDTWKDRNDFITAVERGEKPLTERQAIGVLRLSLDVEARRTAAITASRDLLGWLAGIAAVACVTLAFGVRSVPREHWPRIALGRRADA*
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