NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0133913_10105539

Scaffold Ga0133913_10105539


Overview

Basic Information
Taxon OID3300010885 Open in IMG/M
Scaffold IDGa0133913_10105539 Open in IMG/M
Source Dataset Namenorthern Canada Lakes Co-assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7548
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (41.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005562Metagenome / Metatranscriptome396Y
F020322Metagenome224N
F057201Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0133913_1010553912F057201GAGGMQVLGKIITSAILVGIITLVIEAIIYEREVAAAIRKDKPFYE*
Ga0133913_1010553913F020322GGAMSDQDQVWNAFISAMPAQDKARHDLENFQAKLLKNALRELEEQNLKILELRAQIVLLEEMLQGYSSLLFDVTADRDRFRDDWKAMTKELSRWRPA*
Ga0133913_101055395F005562N/AMIKPNIQIDDEVREMTDDEYDALLTSGWTETAQNDLAG*
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