NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138898_103489

Scaffold Ga0138898_103489


Overview

Basic Information
Taxon OID3300010939 Open in IMG/M
Scaffold IDGa0138898_103489 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from North Pond, Atlantic Mid-Ocean Ridge - NP_1384A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1942
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From North Pond, Atlantic Mid-Ocean Ridge.

Source Dataset Sampling Location
Location NameNorth Pond, Atlantic Ocean
CoordinatesLat. (o)22.81Long. (o)-46.09Alt. (m)Depth (m)4476
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023365Metagenome210Y
F085808Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0138898_1034892F023365GGCGGMANIGEAAEIINASELTLEVGPDTYITVLELHLHVGRPEDRTATTDAGALFTYGKGDNWFTATLLPTTPELGDLTPSYNFLTKIDADGDMPSRAWKLVARDLSGNTKTYALTGILRDYDLRKPREGKAEIDLFVRVTSDTITIT*
Ga0138898_1034894F085808AGGAMTYVALWQVQTSAADGTEALAGDTHTIDFIDSDNKAPSEGAFISDVEVSFRRAVPENEAVDADNNELQDMGIDGFDVTIVGVIGDADNDAVANPVNKISKWLQDGNTTTLFTKGRYGLRLDRSPQWNVVPTSTFGYHIKDCIFKYIGEKKDLVEYTLKLSLGGDIITAI*
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