Scaffold Ga0138898_112952

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0138898_112952

Scaffold Ga0138898_112952

Overview

Basic Information
Taxon OID	3300010939 Open in IMG/M
Scaffold ID	Ga0138898_112952 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from North Pond, Atlantic Mid-Ocean Ridge - NP_1384A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Marine Biological Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	839
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From North Pond, Atlantic Mid-Ocean Ridge.

Source Dataset Sampling Location
Location Name	North Pond, Atlantic Ocean
Coordinates	Lat. (^o)	22.81	Long. (^o)	-46.09	Alt. (m)		Depth (m)	4476
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F094843	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0138898_1129521	F094843	AGGAG	MVACVHVAKILPGEKEEFMQQLKEGFETGREALRSFGFTRIVSFTTPEVVGDGEALLVTVYEAEDPSVVERLYKLEPVLQQEARAHGVLVAPHDHEAVPKNVAFVDMDLTS*

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