Scaffold Ga0139327_116369

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0139327_116369

Scaffold Ga0139327_116369

Overview

Basic Information
Taxon OID	3300010992 Open in IMG/M
Scaffold ID	Ga0139327_116369 Open in IMG/M
Source Dataset Name	ELM11109_Bassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method B (2X150bp)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	663
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Cwc Coastal Marshes

Source Dataset Sampling Location
Location Name	Louisiana, Port Sulphur, Bay Sansbois east
Coordinates	Lat. (^o)	29.4542	Long. (^o)	-89.76993	Alt. (m)		Depth (m)	0 to .02
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F056324	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0139327_1163691	F056324	AGGAGG	MKGKAVILLMILSFMAAFSGCAGSKTYLMDVRYVPGEKAPPSSKTVGICPFEDARKDKGKETIGVRYRPGKNVDLLNLKGISLSQSVTQAVEDYFAEKGFEVTDCKGWDKSAEGLDGLPKDLSLVIGGKIDSFMVEAKSGVSITNIRYTVKLEALIGKIGERKVVTRTIESSPTRKKVGFDPDKVKAELN

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