NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0139327_132949

Scaffold Ga0139327_132949


Overview

Basic Information
Taxon OID3300010992 Open in IMG/M
Scaffold IDGa0139327_132949 Open in IMG/M
Source Dataset NameELM11109_Bassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method B (2X150bp)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)527
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Cwc Coastal Marshes

Source Dataset Sampling Location
Location NameLouisiana, Port Sulphur, Bay Sansbois east
CoordinatesLat. (o)29.4542Long. (o)-89.76993Alt. (m)Depth (m)0 to .02
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028664Metagenome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0139327_1329491F028664N/AMKENSKILVGGQALRNLGHDRHTNDTDYLINDLSTKDAFITSDAVDYLNANGNKFFAEIFKLEAGNEQATPQSLFELKAYAFVQHCQNFNWAKADACEYDLKFLKREFGCRPQIVKKY

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.