NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151516_10539

Scaffold Ga0151516_10539


Overview

Basic Information
Taxon OID3300011116 Open in IMG/M
Scaffold IDGa0151516_10539 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Nov
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)18383
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (53.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.947421Long. (o)127.818872Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001964Metagenome610Y
F002227Metagenome580Y
F003748Metagenome / Metatranscriptome470Y
F077447Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0151516_1053921F003748N/AMFKVNRKDAGSNYINAEGEYTVTVMKVEENLDVKGREVCKVTFATDEGASITDRFINQENTWFRVNQLVAATNHNVPDGTEVDFLGTKGSFANFLKAMIGLQLGIVTRFEEYEFNGEKKKTLRLKAMKPLAPAAPEEKPF*
Ga0151516_1053927F001964GGAGGMSRNLFAPPAFKVQINGAIGWSDLKQRVVSFRTIEYASRKEAEQAAKELNPGEYTQGRIRVVPVEMPEDYDVYPVTERTNKTNP*
Ga0151516_1053929F002227N/AMKLTIQSKQNAQTIIDLFNAVINGEVQEHQATPLSIYDEEKHICSIVAANGEQILELIIEREAGDMLVQQTGEPETLQ*
Ga0151516_105397F077447AGGMLPKMKYKNSGNSSVEVEVISDDVEIRIGETKWSGVAYVRDGKTKLYVRTKAEFKAKFVPIDAKP*
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