NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137483_100001

Scaffold Ga0137483_100001


Overview

Basic Information
Taxon OID3300011244 Open in IMG/M
Scaffold IDGa0137483_100001 Open in IMG/M
Source Dataset NameArctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 18 - S13.2.60.3.a - transect 2, repeat 3, age 113 years, surface depth)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Bristol
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)819474
Total Scaffold Genes735 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)277 (37.69%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Source Dataset Sampling Location
Location NameMidre Lovenbreen, Svalbard, Norway
CoordinatesLat. (o)78.97888889Long. (o)12.33222222Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000116Metagenome2132Y
F080405Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0137483_100001325F080405GGALRCHIGYDTVARVRDKESTAITITLPLALDRALQALADQKHCGNKSAAIREVLYKEAGVQGKLRLNEKKDNDAVTNAERRSVKYGSRKPKKSRK*
Ga0137483_100001630F000116N/AVEQKGQITSPASRQIRPPPLSQHLREFAANPHAWAALGRNLIPVVGIYVFGWSAALSVFSYWFDGLIALAAIIAALLPRLLREMPPPSHEASADAKLWRDRPARQGRQGAKVAGPMRKIVTGVVTWIILVGVVGLPYWIVLIPLHDMLLGHELRSELAHSLALWLTFGSLAVGHFWNAFRAGYDGMPEDQLKQRVRWDVYLLVLRAVAMFVMAGHGLYFILVPLMALLLTYMEVWPGRVLGAVFGDPSRLWEYDPDKKTRR*
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