Sample 3300011244

3300011244: Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 18 - S13.2.60.3.a - transect 2, repeat 3, age 113 years, surface depth)

Overview

Basic Information
IMG/M Taxon OID	3300011244 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0121480 \| Gp0155992 \| Ga0137483
Sample Name	Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 18 - S13.2.60.3.a - transect 2, repeat 3, age 113 years, surface depth)
Sequencing Status	Permanent Draft
Sequencing Center	University of Bristol
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	52131008
Sequencing Scaffolds	39
Novel Protein Genes	43
Associated Families	36

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	7
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	9
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Metagenomes Of Arctic Soils
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → glacial feature → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Midre Lovenbreen, Svalbard, Norway
Coordinates	Lat. (^o)	78.97888889	Long. (^o)	12.33222222	Alt. (m)	N/A	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000116	Metagenome	2132	Y
F001230	Metagenome / Metatranscriptome	741	Y
F006620	Metagenome / Metatranscriptome	368	Y
F008258	Metagenome / Metatranscriptome	336	Y
F009763	Metagenome / Metatranscriptome	313	Y
F013996	Metagenome / Metatranscriptome	266	Y
F019957	Metagenome / Metatranscriptome	226	Y
F022920	Metagenome	212	Y
F023244	Metagenome / Metatranscriptome	211	Y
F023883	Metagenome / Metatranscriptome	208	Y
F027713	Metagenome / Metatranscriptome	193	Y
F030320	Metagenome / Metatranscriptome	185	Y
F032127	Metagenome	180	Y
F036799	Metagenome / Metatranscriptome	169	Y
F037001	Metagenome	168	Y
F038495	Metagenome	165	Y
F039575	Metagenome / Metatranscriptome	163	Y
F045796	Metagenome / Metatranscriptome	152	Y
F050290	Metagenome	145	Y
F051753	Metagenome / Metatranscriptome	143	Y
F052417	Metagenome / Metatranscriptome	142	Y
F059036	Metagenome	134	Y
F059712	Metagenome / Metatranscriptome	133	Y
F063781	Metagenome / Metatranscriptome	129	Y
F065818	Metagenome / Metatranscriptome	127	N
F067309	Metagenome	125	Y
F073514	Metagenome / Metatranscriptome	120	Y
F076730	Metagenome	117	Y
F076881	Metagenome / Metatranscriptome	117	Y
F078433	Metagenome / Metatranscriptome	116	Y
F080405	Metagenome	115	Y
F090177	Metagenome	108	Y
F092375	Metagenome / Metatranscriptome	107	Y
F094209	Metagenome	106	Y
F098376	Metagenome	103	Y
F098418	Metagenome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0137483_100001	All Organisms → cellular organisms → Bacteria	819474	Open in IMG/M
Ga0137483_100010	All Organisms → cellular organisms → Bacteria	233958	Open in IMG/M
Ga0137483_100025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	120958	Open in IMG/M
Ga0137483_100027	All Organisms → cellular organisms → Bacteria	119304	Open in IMG/M
Ga0137483_100032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	105601	Open in IMG/M
Ga0137483_100033	All Organisms → cellular organisms → Bacteria → Proteobacteria	104140	Open in IMG/M
Ga0137483_100091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	19636	Open in IMG/M
Ga0137483_100133	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	12617	Open in IMG/M
Ga0137483_100163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	11104	Open in IMG/M
Ga0137483_100170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	10723	Open in IMG/M
Ga0137483_100175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	10439	Open in IMG/M
Ga0137483_100185	All Organisms → cellular organisms → Bacteria	9995	Open in IMG/M
Ga0137483_100236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7944	Open in IMG/M
Ga0137483_100259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	7374	Open in IMG/M
Ga0137483_100270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	7122	Open in IMG/M
Ga0137483_100433	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	5264	Open in IMG/M
Ga0137483_100457	All Organisms → cellular organisms → Bacteria	5146	Open in IMG/M
Ga0137483_100488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	4919	Open in IMG/M
Ga0137483_100492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4905	Open in IMG/M
Ga0137483_100514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4791	Open in IMG/M
Ga0137483_100657	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4275	Open in IMG/M
Ga0137483_100826	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3814	Open in IMG/M
Ga0137483_100928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3606	Open in IMG/M
Ga0137483_101546	All Organisms → cellular organisms → Bacteria → Proteobacteria	2775	Open in IMG/M
Ga0137483_101597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	2725	Open in IMG/M
Ga0137483_101900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2463	Open in IMG/M
Ga0137483_102099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2345	Open in IMG/M
Ga0137483_102157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	2307	Open in IMG/M
Ga0137483_102434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	2142	Open in IMG/M
Ga0137483_102524	Not Available	2103	Open in IMG/M
Ga0137483_102799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1989	Open in IMG/M
Ga0137483_102949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1933	Open in IMG/M
Ga0137483_104504	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1492	Open in IMG/M
Ga0137483_106358	Not Available	1194	Open in IMG/M
Ga0137483_106419	All Organisms → cellular organisms → Bacteria	1186	Open in IMG/M
Ga0137483_107086	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1107	Open in IMG/M
Ga0137483_109796	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
Ga0137483_111797	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	752	Open in IMG/M
Ga0137483_118005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	511	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0137483_100001	Ga0137483_100001325	F080405	LRCHIGYDTVARVRDKESTAITITLPLALDRALQALADQKHCGNKSAAIREVLYKEAGVQGKLRLNEKKDNDAVTNAERRSVKYGSRKPKKSRK*
Ga0137483_100001	Ga0137483_100001630	F000116	VEQKGQITSPASRQIRPPPLSQHLREFAANPHAWAALGRNLIPVVGIYVFGWSAALSVFSYWFDGLIALAAIIAALLPRLLREMPPPSHEASADAKLWRDRPARQGRQGAKVAGPMRKIVTGVVTWIILVGVVGLPYWIVLIPLHDMLLGHELRSELAHSLALWLTFGSLAVGHFWNAFRAGYDGMPEDQLKQRVRWDVYLLVLRAVAMFVMAGHGLYFILVPLMALLLTYMEVWPGRVLGAVFGDPSRLWEYDPDKKTRR*
Ga0137483_100010	Ga0137483_100010114	F094209	MTGTGTRTREAAEQSPARTPYGLLWTTGIAAVVLSIAAFILWGTNGASTLFDMIVALCT*
Ga0137483_100025	Ga0137483_100025106	F023883	MTPLPKPKSSTDPTAADPDKNARLETYEQEVERASVESLAEHPEGSAPPLERLVDAHPEKQRK*
Ga0137483_100027	Ga0137483_10002753	F078433	MSKLMILFVLFVSGSLYDPPRVLNHLGPGATAIGWHIKSTFGFR*
Ga0137483_100032	Ga0137483_10003236	F009763	MFKKNIHPLDLLLAVLAAALPGAAIFYWLAMSGRLPFGFLFGLVYLLTAASVMLAVIGGMVAFAIWFFSPHR*
Ga0137483_100033	Ga0137483_10003352	F059036	MTAAENLAIDLADDEERCLVHARTAARQAVMKGMDRETLADAFMLEAVKLTFGVEDAEAARLAQQWKEQTFRLLDADYVTHSADGRPRVVRLLRPVSRERLMNSSAWVKAR*
Ga0137483_100091	Ga0137483_10009115	F038495	VPSDQQRSLERAAADAHAAIERGDPWAANDAWRRYVLIEDAQRDPQELLDEGVALSKVAIDLWLQR*
Ga0137483_100091	Ga0137483_1000917	F037001	VTAKERVVLGALRDAQHEHDGEAVSVRQVAAACPAPWHGRPDLVTQALVLLERHGLVLVAPGSTRAWKITAAGRLMLAPRRGPARERPVIGGGRHPR*
Ga0137483_100133	Ga0137483_1001334	F008258	VTQDPIEQVLDKLGSFGLPVTEIGEKTGAIVGSLGSFDLFEIVDQLGAIDPSQLDVQEILGQMMDKYNELDPALKVPVAIAAGFVGARVVRWIVR*
Ga0137483_100163	Ga0137483_10016312	F050290	MRKPWESEQAAFAFLLRVVAVCVALIVLSIVLKAIF*
Ga0137483_100170	Ga0137483_10017010	F006620	MTSSPWTDPDPQPGDFDADLAKLDPRYVERRDGDPDARLIVLVGVEGGDAQRLERIAEARGQTAADVVAELLRDAARSLA*
Ga0137483_100170	Ga0137483_10017011	F022920	VAVVRVTISQLLVTDVALDKLGARGISAGEVQQLVGNDHVVVGNPRGGRQSDPRRLLFGVTDGGRALTIVIERTVDPTIWLIVTGWNSTAVERNLLGRR*
Ga0137483_100175	Ga0137483_1001752	F030320	MDSFALSERWNGWANLPVMVEAARAAAAAGPFDPLICEIEVEWDDESEASLDSLEAAEDLLRRRDEPVSLDIWVAHAVDSEANVRLVYNGRWLQIYGAGSDWSRAKAAYDAAQVEIALVAGITTFMLPKLPADTVADVRKRVGAKDRDPGRLGGDEQPPKPGV*
Ga0137483_100185	Ga0137483_1001853	F039575	MTDDSIRTLLASLTPAPFIWSRPGTVVLMDNHVEEAGGDSDAVGEWVEAHGGEIDRTLPVVATRRGVTSIPKPVGKRYYVVPESLLRDASEG*
Ga0137483_100236	Ga0137483_1002369	F013996	MSRELLILVSYVEAALLVVILSVGLNQVRKRLIIISNGLKELAGMLASVESQHLRGLMGWVIAINGPLQVIAGVLPGIAAKAALVVRKATGG*
Ga0137483_100259	Ga0137483_1002597	F027713	VGAFELSERWCGWRDLDVIFIAARAAIEAGPFDPPICEVVFDEEFDPFTVDTLEEAREHLRRYRVLSMDIILSHIDEDAARLTLRYSGERLQLDGYGSDWERARAAYDAAQSELAGHFGITTFKLPKLPRDTVGETRKRLVIEELEAALENVDSGLEDR*
Ga0137483_100270	Ga0137483_1002705	F019957	MIPTSSIILAVSENQQAWQFTLVAGVVVLLVVILLLELLRRSVSRLNDDLWSAWVSGKKVVKNTATTYQLKNTRDSGSELVEELRNHG*
Ga0137483_100433	Ga0137483_1004337	F036799	MNVACQKRSISFDESVLAEAERQAAVTGGNLSAFVNAAVLRELRIARGLDLLAEDDEQFGPVPDDVRAEIAATWPD*
Ga0137483_100457	Ga0137483_1004572	F051753	MAHAEPDALGGEQLELTLGPLYVVTVDDRVAGPLTTRPARTYRSPPQGLEEARCLALLLLDRGDDLSGDGPWRRPLPGGQRHVAIVRAPGGTIG*
Ga0137483_100488	Ga0137483_1004886	F008258	VTQDPIEQALEKLGSYGVPVNEIGERVGGLVGQLGAIDPLDIMEQLGSIDPKQIDVGDMVGELQERFEALDPALKVPVLLAAGFVGARVVRWIVR*
Ga0137483_100492	Ga0137483_1004923	F023244	MYVISIHSVSDPVAFWGGQLDLPEGTELPIVAPNSDGSRGVRVFKSDSVDTVRSLVEGAAGKISSNEYYAINEGSAQGLPV*
Ga0137483_100514	Ga0137483_1005144	F037001	VTAKQRVVLGALRDAQYAYDGQAVSAGQIAAVCRAPWRGRPDLVTQALVLLERHGLVLVAAGSTRAWKITAAGRLMLAPRRGPARERPVIGCGPHAR*
Ga0137483_100657	Ga0137483_1006575	F013996	VTTTQMILLSMLSPALLVVILAVALTMVRRRLTIISEGLGTLGGALATVESQHLRPLLGLVNVTNPPLNTIAITLPGIAAKAALVVRKATGG*
Ga0137483_100826	Ga0137483_1008265	F032127	MTLDEALLQLNDRLGHEVTAWVEVSHEMPLLIASGHLQNWHLDVTDDVPAAGATHFDLYGHYALGDETRLDLSEAQVDSVDAREHGLTFRLAGGARLVVTWQPPVAPDDLL*
Ga0137483_100928	Ga0137483_1009284	F032127	MNIDEALLCLNDRLGQEVTAWIEVIHEQPLLIATGILENWGRETTPEAVRENPQRFDLYGHYSLADARFDLSDAPVESVSDRPDGKGLTFRFAGGVRLIVTWLPMPEEGMV*
Ga0137483_101546	Ga0137483_1015462	F092375	MNLQISGSTRPKLYPPKALLSIGPGERRSPILSGTELRRVVTEVIG*
Ga0137483_101597	Ga0137483_1015973	F001230	MMRAVSTDSGEAVRRAHDWFEVNSGWAPPDEETLAEWVADGVCRCPDECLVAPDEWCEHGLASWFLILAALREAGG*
Ga0137483_101900	Ga0137483_1019002	F076730	MADDQTPSVRNVGAIASLNHESPDDPDWAIVDLRLFARTDGGDEVVDPQNSARVRIERSKLAALELSVQMSLRLRQAPTGPRKEAWQRIADALASRGIATDPETLRPMKFELRPDDELRAAQQAVWPAGH*
Ga0137483_102099	Ga0137483_1020993	F063781	MDVSVEIHCETCGSANYSLPDGSADDAPIRCNDCGAPQGTIGELRAILLQQAIDHSAEALRRDLDRLLEAKL*
Ga0137483_102157	Ga0137483_1021573	F027713	MCQRLGVFAATPSAYPLGVDRFELSERWCGWSDLDVIFVAARAAIEAGPFDPPICEVVFDEEFDPVTVDTLEEAREHLRRSRVLSMDIILSHIDEDEARVTLRYSGQRLQLNGYGSDWRRARAAYDAAQAELASHFGITTFKLPKLPRDTVAETRKRIVIEELEAALENVDSSSENR*
Ga0137483_102434	Ga0137483_1024342	F076881	MTSKTITPKTMTPKTFRCPECYARVVAEPDDDAKTALWLHGLSGRCRAKQTPKAEKPRRKERLEAMLGEEWG*
Ga0137483_102524	Ga0137483_1025243	F045796	MSISLTSLQSLAVSLIGAIVASSLLLSAAMGPVPIV*
Ga0137483_102799	Ga0137483_1027992	F038495	LSVDQSRRLDDAAAQAHAAQARGDDHAANDAWRRYVLIEDAMRDPQDLLDEGVALSKVAIDLWLQG*
Ga0137483_102949	Ga0137483_1029491	F090177	VEIVLRTCTPEGIAVVLPAVVYAKVLEEHAAVADLELIDRTIRTPVARRPDVRPGRERFFGHERGIWVLAVVEFGEVPAIIVTVFSADHQPI*
Ga0137483_104504	Ga0137483_1045043	F098418	MLPVSRVRAVPWIVVFELAVTLRKHYKRLTPGERAHLTHLLRKSQGRPGRLTPKERADVRRLVAKMEPGVFAKSIVPIGRKAVKARRKLV*
Ga0137483_106358	Ga0137483_1063583	F052417	VARNASDLPVGPAIVVTNPDEDCSPSAFRALLDELFAGPEPELESIGAAEALRELRVDAGA*
Ga0137483_106419	Ga0137483_1064191	F019957	VLALLSNNQSAWLYTLLAALVVLVVVIILLEGLKRTVNKLEADIWRTWVSGKDVVAHTATTYLLKNTRESADELVEELSHHG*
Ga0137483_107086	Ga0137483_1070862	F098376	MAGLRTLATTILQKTNCQNKKEQLEDFADNFDNLILTLKAFNFL*
Ga0137483_109796	Ga0137483_1097962	F067309	MSHIIGRPNDDLLDVMLGQGADPEQAFIGGSELGLEEGDGFEDRQLGDEPTVPER*
Ga0137483_111797	Ga0137483_1117972	F065818	MPEKGQQAKVYDIPDADLSKYEAVEGTMATYDEAKEKIAGGKELGAGVDLDKADVQAYSDICICYFWWRGVLYYRYQYCWQSCP*
Ga0137483_114509	Ga0137483_1145092	F059712	LEAASIPAVTAVPHEPIQFAAFANRLALGLAAGLIAVLIHGEAGRLSSRDLTWRALLGS*
Ga0137483_118005	Ga0137483_1180051	F073514	MRVTRSRELVAAGYRPAAVARVAQISRQAIYRKPRSRRVP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300011244: Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 18 - S13.2.60.3.a - transect 2, repeat 3, age 113 years, surface depth)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences