NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153700_10068

Scaffold Ga0153700_10068


Overview

Basic Information
Taxon OID3300011339 Open in IMG/M
Scaffold IDGa0153700_10068 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Hannam
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)42152
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (47.62%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameSeoul, South Korea
CoordinatesLat. (o)37.5254611Long. (o)127.0168945Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066528Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0153700_1006823F066528GAGMTTAYATAADFTTWGERAKSMTVAALLYTVNDCHKAADAMRGWNPIKEGFYMDQASTYGMELNRR*
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