NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119951_1002220

Scaffold Ga0119951_1002220


Overview

Basic Information
Taxon OID3300012000 Open in IMG/M
Scaffold IDGa0119951_1002220 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10853
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.21Long. (o)-83.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031072Metagenome / Metatranscriptome183Y
F098637Metagenome / Metatranscriptome103Y
F102624Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0119951_100222011F102624GAGMKYITNNYEYKNEWFNVLLSLLFTPFYSCFFIQKFSLTQIKSYLSPERRHVLKYPIITGLLYTVETVVVFYALNTITLSYYTILRSGFIIFNIPWFKYLLKKPITRLYYISCGSLVVAQVVSSAQYIFYYQANSDRRAQNVIQNIVIVFISCFLNSTYNNVIEYAMSNHGNSITNIDFQIMFQATYFALALPWAVYYTTKHPPPMNTSTMTMYFFIAFGLQLYMFNKIYILNSKERAIPANILLSGLDIIRRVIQLTYSFVWFKEPFDAIIGVSLLFLAASGGLLLYQYIYDYRVGMA
Ga0119951_10022203F098637N/AMYTIINRLKFNRTMNTNNCPPAPPSTPYPEDTNEYHGWYSHAQQVMRVSHPSSHKFNGKIMVSPPYCYWTQGDRKVLVTEVSHTSIPTPRQVANGDIYLGRVDKYWGRSYTRLAETS*
Ga0119951_10022204F031072N/AMQTLQFTNPNPRTSPAGLSGSFNANNQGYSGTGRVTIGNENRNVFVQGQVSGGWSGGRPNVGGMVGGMIRF*
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