Scaffold Ga0157497_1001678

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0157497_1001678

Scaffold Ga0157497_1001678

Overview

Basic Information
Taxon OID	3300012664 Open in IMG/M
Scaffold ID	Ga0157497_1001678 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Zephyr Creek, Ontario, Canada - S17
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4013
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Pefferlaw, Ontario
Coordinates	Lat. (^o)	44.25162	Long. (^o)	-79.2626	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F091218	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157497_10016784	F091218	N/A	MPKVSRIVDWMRTEFPGTKVLYAEEGQYRVGKKPDPSKYATPNIAYLSDKPTVKKGKKNE

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