NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164307_10045436

Scaffold Ga0164307_10045436


Overview

Basic Information
Taxon OID3300012987 Open in IMG/M
Scaffold IDGa0164307_10045436 Open in IMG/M
Source Dataset NameSoil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2487
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Mt. Pleasant research farm, Cornell University, New York
CoordinatesLat. (o)42.4531Long. (o)-76.3842Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051518Metagenome / Metatranscriptome144Y
F077847Metagenome / Metatranscriptome117Y
F098146Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0164307_100454364F051518N/AMFGEESQDWKEKFMSNNNDNRVLSRIGARQLKSDELEQITAAGGPFTRASLTGTNTMHNPDTDMDS*
Ga0164307_100454366F077847AGGAGMPNKDNNRVLTRMGARKLSQEELNGVSGGLIPTRLSVLVTGPSSHPDQSFDT*
Ga0164307_100454367F098146AGGAGMSNDSNRVLTRRGARQLSHDEMEQTAGGGATLLSVIVTNTAGNPDQRLDS*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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