NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0170683_10142079

Scaffold Ga0170683_10142079


Overview

Basic Information
Taxon OID3300013027 Open in IMG/M
Scaffold IDGa0170683_10142079 Open in IMG/M
Source Dataset NameGypsum rock hypoendolithic microbial communities from the Atacama Desert, Chile - Monturaqui
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJohns Hopkins Bayview Research CORES
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)621
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Rock → Gypsum Rock Endolithic And Hypoendolithic Microbial Communities

Source Dataset Sampling Location
Location NameChile: Atacama Desert
CoordinatesLat. (o)-23.57431Long. (o)-68.10215Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054147Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0170683_101420791F054147AGGAMANSSDDRDDRDDPKGERGGDTGNPDQKGKGAQAEKGDQRRENPVHSGPTRRGSQGTDSGKKHRSGSDSGGSR*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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